PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g044510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 296aa    MW: 33621.5 Da    PI: 6.9672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g044510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10119165455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Csa16g044510.1 119 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKVTVLDDAISRMKQLQ 165
                     5899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-10120169No hitNo description
SMARTSM003532.7E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEEDFRLADF SLENIDFDFN IYEENNLSAN EAGMDSKQAH RSSHFDHQMH LEFLGQKPKS  60
AVKPMMKINN NPRVISFDFS SNVSSSPAVE EIIMDQLVGR GTKRKTCSHG TRSPVLAKEH  120
VLAERKRREK LSEKFIALSA LLPGLKKADK VTVLDDAISR MKQLQEQLRK LKEEKEATRE  180
MESIILVKKS KVLYDDEPNL SSSPSYHNQF DQALPEIEAK VSQNDVLIRI HCEKSKGRMI  240
NILNTIENLQ LRIENSIVLP FGDSTLDITV LAQMDKDFSV SVLKDLVRNL RLALV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935590.0AB493559.1 Arabidopsis thaliana At2g22760 mRNA for hypothetical protein, partial cds, clone: RAAt2g22760.
GenBankDQ4465500.0DQ446550.1 Arabidopsis thaliana clone pENTR221-At2g22760 basic helix-loop-helix family protein (At2g22760) mRNA, complete cds.
GenBankDQ6530160.0DQ653016.1 Arabidopsis thaliana clone 0000012971_0000009346 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472272.10.0PREDICTED: transcription factor bHLH19-like isoform X1
SwissprotQ1PF160.0BH019_ARATH; Transcription factor bHLH19
TrEMBLC0SV561e-180C0SV56_ARATH; Putative uncharacterized protein At2g22760 (Fragment)
STRINGAT2G22760.11e-179(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-162bHLH family protein